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fix: Check if MANE transcript exists in UTA, if not select longest compatible #378

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fix: Check if MANE transcript exists in UTA, if not select longest compatible #378

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@jarbesfeld jarbesfeld commented Nov 12, 2024 •
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Closes #377

@jarbesfeld jarbesfeld self-assigned this Nov 12, 2024
korikuzma
korikuzma requested changes Nov 13, 2024
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Quick initial review

src/cool_seq_tool/sources/uta_database.py Outdated Show resolved Hide resolved
src/cool_seq_tool/sources/uta_database.py Outdated Show resolved Hide resolved
src/cool_seq_tool/mappers/exon_genomic_coords.py Show resolved Hide resolved
src/cool_seq_tool/mappers/exon_genomic_coords.py Show resolved Hide resolved
@korikuzma korikuzma removed their request for review November 14, 2024 15:18
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@jarbesfeld said he is still looking into things. Please re-request my review when ready

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@korikuzma korikuzma Awaiting requested review from korikuzma

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genomic_to_tx_segment should check if a MANE Select transcript is in UTA
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