Add model builder #171
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# much of this is taken from the Empress main.yml file | |
name: BIRDMAn CI | |
on: | |
pull_request: | |
paths-ignore: | |
- "docs/**" | |
- "README.md" | |
branches: | |
- main | |
push: | |
paths-ignore: | |
- "docs/**" | |
- "README.md" | |
branches: | |
- main | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.7", "3.8", "3.9"] | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
persist-credentials: false | |
fetch-depth: 0 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: birdman | |
mamba-version: "*" | |
channels: conda-forge,defaults | |
channel-priority: true | |
python-version: ${{ matrix.python-version }} | |
- name: Install conda packages | |
shell: bash -l {0} | |
run: mamba install -c conda-forge biom-format patsy pytest xarray scikit-bio flake8 arviz cmdstanpy | |
- name: Install BIRDMAn | |
shell: bash -l {0} | |
run: pip install -e .[dev] | |
- name: Check style | |
shell: bash -l {0} | |
run: flake8 birdman/*.py tests/*.py setup.py | |
- name: Run tests | |
shell: bash -l {0} | |
run: pytest --disable-pytest-warnings |