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v0.0.10 #75

Merged
merged 56 commits into from
Jan 18, 2024
Merged

v0.0.10 #75

merged 56 commits into from
Jan 18, 2024

Commits on Apr 6, 2022

  1. init joint solve

    @cameronmartino
    cameronmartino committed Apr 6, 2022
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Commits on Jun 20, 2022

  1. init joint functions

    @cameronmartino
    cameronmartino committed Jun 20, 2022
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Commits on Aug 24, 2022

  1. update cov calculations

    @cameronmartino
    cameronmartino committed Aug 24, 2022
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Commits on Oct 27, 2022

  1. flake8 optspace

    @cameronmartino
    cameronmartino committed Oct 27, 2022
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  2. add transformation functions

    @cameronmartino
    cameronmartino committed Oct 27, 2022
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  3. joint-opt

    @cameronmartino
    cameronmartino committed Oct 27, 2022
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  4. add standalone script

    @cameronmartino
    cameronmartino committed Oct 27, 2022
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Commits on Nov 7, 2022

  1. add scripts standalone and q2

    @cameronmartino
    cameronmartino committed Nov 7, 2022
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  2. add scripts testing

    @cameronmartino
    cameronmartino committed Nov 7, 2022
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  3. add testing data scripts

    @cameronmartino
    cameronmartino committed Nov 7, 2022
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  4. update flake8 in optspcae

    @cameronmartino
    cameronmartino committed Nov 7, 2022
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Commits on Nov 29, 2022

  1. update transform docs & param name

    @cameronmartino
    cameronmartino committed Nov 29, 2022
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  2. add new data projection scripts

    @cameronmartino
    cameronmartino committed Nov 29, 2022
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  3. add tests for transformer

    @cameronmartino
    cameronmartino committed Nov 29, 2022
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  4. fix index name, breaks conversion in q2

    @cameronmartino
    cameronmartino committed Nov 29, 2022
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Commits on Dec 1, 2022

  1. fix cv output to work with qiime2

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  2. add utility functions to help with donwstream analysis

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  3. add feature table corr type and function

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  4. fix type issues

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  5. add index name to corr for transformer

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  6. first tutorial

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  7. add tutorial data/images

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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  8. update tutorial one

    @cameronmartino
    cameronmartino committed Dec 1, 2022
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Commits on Dec 2, 2022

  1. fix new scripts

    @cameronmartino
    cameronmartino committed Dec 2, 2022
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  2. add tutorials for joint rpca

    @cameronmartino
    cameronmartino committed Dec 2, 2022
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Commits on May 25, 2023

  1. catch up to master

    @cameronmartino
    cameronmartino committed May 25, 2023
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Commits on May 26, 2023

  1. adding tempted & new sparse tensor class functionality

    @cameronmartino
    cameronmartino committed May 26, 2023
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Commits on May 28, 2023

  1. update tempted wrappers for commands

    @cameronmartino
    cameronmartino committed May 28, 2023
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Commits on May 29, 2023

  1. add command and q2

    @cameronmartino
    cameronmartino committed May 29, 2023
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Commits on May 30, 2023

  1. add transformations for tempted

    @cameronmartino
    cameronmartino committed May 30, 2023
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Commits on Jun 1, 2023

  1. fix input types to composition

    @cameronmartino
    cameronmartino committed Jun 1, 2023
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Commits on Nov 25, 2023

  1. Merge pull request #73 from biocore/tempted-dev 

    Add tempted command/code
    @cameronmartino
    cameronmartino authored Nov 25, 2023
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Commits on Nov 27, 2023

  1. add ability to input pre-transformed tables into joint-rpca

    @cameronmartino
    cameronmartino committed Nov 27, 2023
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  2. depreciate auto rpca and rank estimation functionality see issue #70

    @cameronmartino
    cameronmartino committed Nov 27, 2023
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  3. bug fix for issue #71

    @cameronmartino
    cameronmartino committed Nov 27, 2023
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Commits on Nov 28, 2023

  1. add qc on distances see issue #70

    @cameronmartino
    cameronmartino committed Nov 28, 2023
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Commits on Nov 30, 2023

  1. add updated functions for testing and visualizing issue #70

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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  2. update docs for issue #70

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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  3. add commands for rpca with cv, see issue #70

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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  4. update tutorials and add tempted tutorial

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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  5. update tutorials and add tempted tutorial

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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  6. changes logged and version up

    @cameronmartino
    cameronmartino committed Nov 30, 2023
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Commits on Dec 1, 2023

  1. update readme

    @cameronmartino
    cameronmartino committed Dec 1, 2023
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Commits on Dec 9, 2023

  1. update qc and cv intro and code

    @cameronmartino
    cameronmartino committed Dec 9, 2023
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  2. update README

    @cameronmartino
    cameronmartino committed Dec 9, 2023
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Commits on Dec 11, 2023

  1. update readme

    @cameronmartino
    cameronmartino committed Dec 11, 2023
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Commits on Dec 12, 2023

  1. add updates tests examples of QC

    @cameronmartino
    cameronmartino committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. update confusing flag in standalone command

    @cameronmartino
    cameronmartino committed Dec 13, 2023
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  2. make read me header easier to see

    @cameronmartino
    cameronmartino committed Dec 13, 2023
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  3. Merge branch 'master' into jointrpca

    @cameronmartino
    cameronmartino authored Dec 13, 2023
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Commits on Dec 18, 2023

  1. clean up text

    @cameronmartino
    cameronmartino committed Dec 18, 2023
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  2. Merge branch 'jointrpca' of https://github.com/biocore/gemelli into j… 

    …ointrpca
    @cameronmartino
    cameronmartino committed Dec 18, 2023
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Commits on Jan 8, 2024

  1. fix permanova in tutorial

    @cameronmartino
    cameronmartino committed Jan 8, 2024
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  2. add breaking change

    @cameronmartino
    cameronmartino committed Jan 8, 2024
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Commits on Jan 15, 2024

  1. remove unnecessary np.random seed setting

    @cameronmartino
    cameronmartino committed Jan 15, 2024
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  2. add docstring

    @cameronmartino
    cameronmartino committed Jan 15, 2024
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