the beadIndex values are stored as index, not column, so no need to d…

…rop them
gerlichlab · Feb 19, 2025 · 9bddc8c · 9bddc8c
1 parent d3fa335
commit 9bddc8c
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/bin/cli/run_processing_pipeline.py b/bin/cli/run_processing_pipeline.py
@@ -517,9 +517,7 @@ def get_spec_opt(fn: str) -> Option[tuple[BeadRoisFilenameSpecification, Path]]:
         bead_rois = bead_rois[bead_rois[NUC_LABEL_COL] != 0]
         new_num_rois: int = bead_rois.shape[0]
         logging.info("%s: %d --> %d", rois_file, old_num_rois, new_num_rois)
-        bead_rois.drop(BEAD_INDEX_COLUMN_NAME, axis="columns")\
-            .reset_index()\
-            .to_csv(rois_file, index_label=BEAD_INDEX_COLUMN_NAME)
+        bead_rois.reset_index().to_csv(rois_file, index_label=BEAD_INDEX_COLUMN_NAME)
 
 
 def discard_spots_close_to_beads(rounds_config: ExtantFile, params_config: ExtantFile) -> None: