Plotting fix for CBU nodes #413
Conversation
neukym
added
🪲 bug
|
@neukym has confirmed this as working. This branch will remain here as an interim measure while we wait for the new cluster to arrive. It is not intended for merging into the main branch as it includes a number of fixes specific to the CBU nodes and I would rather avoid adding these to the default codebase if we can avoid it. |
|
Note that vtk, 9.4. (https://docs.vtk.org/en/latest/advanced/available_python_wheels.html) might avoid the need for either (a) the os-mesa specific wheel or (b) using xvfb. |
Conflicts: kymata/invokers/invoker_run_nkg_plotting.py kymata/plot/plot.py poetry.lock submit_gridsearch.sh
Conflicts: kymata/plot/plot.py
I can confirm that I have got |
This is a fix (courtesy of Anthony) for issue #409, the bug that affects the printing of 3d surface maps on the current CBU cluster.
This issue will hopefully be deprecated once the new cluster has come online (@neukym currently testing with the help of Jeff) - as such, it may be that we use this branch as a fix for a couple of months, but it is deleted once it is superseded.