Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Plotting fix for CBU nodes #413

Draft
wants to merge 13 commits into
base: main
Choose a base branch
from
Draft

Plotting fix for CBU nodes #413

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
13 commits
Select commit Hold shift + click to select a range
64849f5
First attempt at fix
neukym Nov 25, 2024
0ff3857
Adds ability to try with the next available number of buffer
neukym Nov 26, 2024
631436f
Merge branch 'main' into plotting-fix-for-CBU-nodes
neukym Nov 30, 2024
844e3ad
fix #416
young-x-skyee Dec 1, 2024
ef2196f
fix #417
young-x-skyee Dec 1, 2024
e2eb5f6
Enhanced legend display function
young-x-skyee Dec 1, 2024
b103e01
Using higher precision for threshold p-valus
young-x-skyee Dec 5, 2024
65d0561
update
young-x-skyee Jan 21, 2025
fc9fe7e
update
young-x-skyee Jan 23, 2025
850a17c
Merge branch 'main' into plotting-fix-for-CBU-nodes
young-x-skyee Jan 23, 2025
2cb1b39
update
young-x-skyee Jan 25, 2025
189bc16
Merge branch 'main' into plotting-fix-for-CBU-nodes
young-x-skyee Jan 25, 2025
b5a05b2
update
young-x-skyee Jan 25, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
432 changes: 278 additions & 154 deletions kymata/invokers/invoker_run_nkg_plotting.py
100644 → 100755
View file
Open in desktop

Large diffs are not rendered by default.

13 changes: 12 additions & 1 deletion kymata/plot/plot.py
100644 → 100755
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -809,6 +809,17 @@ def _custom_label(transform_name):
top_ax = bottom_ax = axes[_AxName.main]
top_ax.set_title(title)
bottom_ax.set_xlabel("Latency (ms) relative to onset of the environment")
# if minimap == "large":
# bottom_ax.set_ylabel("p-value")
# else:
# fig.text(
# x=top_ax.get_position().xmin - 0.05,
# y=0.5,
# s="p-value (with α at 5-sigma, Šidák corrected)",
# ha="center",
# va="center",
# rotation="vertical",
# )
bottom_ax_xmin, bottom_ax_xmax = bottom_ax.get_xlim()
bottom_ax.xaxis.set_major_locator(
FixedLocator(_get_xticks((bottom_ax_xmin, bottom_ax_xmax)))
Expand Down Expand Up @@ -855,7 +866,7 @@ def _custom_label(transform_name):
)
legends.append(top_legend)

__reposition_axes_for_legends(fig, legends)
__reposition_axes_for_legends(fig, legends)

__add_axis_name_annotations(axes_names, top_ax, bottom_ax, fig, paired_axes, ylim, minimap)

Expand Down
Loading
Loading