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General cleanup: docs, code optimization, and project structure (#411)
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,106 @@ | ||
| --- | ||
| input_text: Spain is a significant contributor to the global agricultural sector, | ||
| with its primary exports demonstrating the country's diverse climate and agricultural | ||
| capacity. The nation leads the world in olive oil production and export, renowned | ||
| for its quality. Spain is also one of the top wine producers globally, with notable | ||
| regions including Rioja and Ribera del Duero. It exports a wide range of fruits, | ||
| particularly citrus fruits such as oranges and lemons from Valencia, as well as | ||
| peaches, strawberries, melons, and apples. Vegetable exports are substantial, with | ||
| tomatoes, peppers, cucumbers, and lettuce being predominant, especially from the | ||
| Almería region known for its greenhouse production. Spain is recognized for its | ||
| premium pork products, notably jamón ibérico and jamón serrano, and is a leading | ||
| exporter of nuts, particularly almonds and hazelnuts. Additionally, Spain exports | ||
| significant quantities of fish and seafood, including sardines, tuna, and shrimp, | ||
| facilitated by its extensive coastline and fishing traditions. | ||
| raw_completion_output: |- | ||
| terms: Olive oil;Wine;Citrus fruits;Oranges;Lemons;Peaches;Strawberries;Melons;Apples;Tomatoes;Peppers;Cucumbers;Lettuce;Pork products;Jamón ibérico;Jamón serrano;Nuts;Almonds;Hazelnuts;Fish;Seafood;Sardines;Tuna;Shrimp | ||
| label: Spain | ||
| prompt: |+ | ||
| From the text below, extract the following entities in the following format: | ||
| terms: <A semicolon-separated list of any Food Ontology terms.> | ||
| label: <The label (name) of the named thing> | ||
| Text: | ||
| Spain is a significant contributor to the global agricultural sector, with its primary exports demonstrating the country's diverse climate and agricultural capacity. The nation leads the world in olive oil production and export, renowned for its quality. Spain is also one of the top wine producers globally, with notable regions including Rioja and Ribera del Duero. It exports a wide range of fruits, particularly citrus fruits such as oranges and lemons from Valencia, as well as peaches, strawberries, melons, and apples. Vegetable exports are substantial, with tomatoes, peppers, cucumbers, and lettuce being predominant, especially from the Almería region known for its greenhouse production. Spain is recognized for its premium pork products, notably jamón ibérico and jamón serrano, and is a leading exporter of nuts, particularly almonds and hazelnuts. Additionally, Spain exports significant quantities of fish and seafood, including sardines, tuna, and shrimp, facilitated by its extensive coastline and fishing traditions. | ||
| === | ||
| extracted_object: | ||
| id: c2a2b5c7-c262-46b7-a3d7-a733a5a83c7a | ||
| label: Spain | ||
| terms: | ||
| - FOODON:03301826 | ||
| - AUTO:Wine | ||
| - FOODON:00003324 | ||
| - FOODON:03315106 | ||
| - FOODON:03315104 | ||
| - FOODON:03315502 | ||
| - FOODON:00003443 | ||
| - FOODON:00003597 | ||
| - FOODON:00002473 | ||
| - FOODON:03301453 | ||
| - FOODON:00003520 | ||
| - FOODON:00003415 | ||
| - FOODON:00001998 | ||
| - AUTO:Pork%20products | ||
| - AUTO:Jam%C3%B3n%20ib%C3%A9rico | ||
| - AUTO:Jam%C3%B3n%20serrano | ||
| - FOODON:03303171 | ||
| - FOODON:00003523 | ||
| - FOODON:00002933 | ||
| - FOODON:03411222 | ||
| - AUTO:Seafood | ||
| - FOODON:03411558 | ||
| - FOODON:03411269 | ||
| - FOODON:03411237 | ||
| named_entities: | ||
| - id: FOODON:03301826 | ||
| label: Olive oil | ||
| - id: AUTO:Wine | ||
| label: Wine | ||
| - id: FOODON:00003324 | ||
| label: Citrus fruits | ||
| - id: FOODON:03315106 | ||
| label: Oranges | ||
| - id: FOODON:03315104 | ||
| label: Lemons | ||
| - id: FOODON:03315502 | ||
| label: Peaches | ||
| - id: FOODON:00003443 | ||
| label: Strawberries | ||
| - id: FOODON:00003597 | ||
| label: Melons | ||
| - id: FOODON:00002473 | ||
| label: Apples | ||
| - id: FOODON:03301453 | ||
| label: Tomatoes | ||
| - id: FOODON:00003520 | ||
| label: Peppers | ||
| - id: FOODON:00003415 | ||
| label: Cucumbers | ||
| - id: FOODON:00001998 | ||
| label: Lettuce | ||
| - id: AUTO:Pork%20products | ||
| label: Pork products | ||
| - id: AUTO:Jam%C3%B3n%20ib%C3%A9rico | ||
| label: Jamón ibérico | ||
| - id: AUTO:Jam%C3%B3n%20serrano | ||
| label: Jamón serrano | ||
| - id: FOODON:03303171 | ||
| label: Nuts | ||
| - id: FOODON:00003523 | ||
| label: Almonds | ||
| - id: FOODON:00002933 | ||
| label: Hazelnuts | ||
| - id: FOODON:03411222 | ||
| label: Fish | ||
| - id: AUTO:Seafood | ||
| label: Seafood | ||
| - id: FOODON:03411558 | ||
| label: Sardines | ||
| - id: FOODON:03411269 | ||
| label: Tuna | ||
| - id: FOODON:03411237 | ||
| label: Shrimp |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,175 @@ | ||
| --- | ||
| input_text: Zambia and the DR Congo are situated in the central African Copperbelt, | ||
| which is part of the Lufilian geological structure arc stretching over from Kolwezi | ||
| in Katanga Province in the DRC to Luanshya in Copperbelt Province in Zambia. The | ||
| area has large copper-cobalt deposits of which the extraction causes severe ecosystem | ||
| damage due to pollution of water, food crops, and the ambient air negatively impacting | ||
| population health. Contamination of drinking water for domestic use and foods (cereals, | ||
| roots and tubers, vegetables, and fruits) was determined by assessing the contents | ||
| of trace metals including Mn, Ni, Pb, Zn, Co, As, U, Cd, and Cu and through a questionnaire | ||
| for environmental damage. Food samples were analyzed by inductively coupled argon | ||
| plasma/optical emission spectroscopy (ICP-OES), while water and urine samples were | ||
| analyzed by inductively coupled argon plasma mass spectrometry (ICP-MS). Concentrations | ||
| of Ni, Pb, and Cd were higher in almost all food crops, although Cu was more in | ||
| samples of Cucurbita maxima and Amaranthus hybridus. Mean contents (μg/L) of Mn, | ||
| Zn, Cd, Pb, and U were, respectively, 5,454.6, 2552.2, 138.7, 39.7, 2361.1, and | ||
| 21.4 in the DRC and 108.9, 543.3, 0.3, 0.2, 1.5, and 0.5 in Zambia, being significantly | ||
| higher and always far above World Health Organization maximum limits in the DRC. | ||
| Urine samples taken only from the DRC contained trace metals with children's samples | ||
| being more contaminated than adult ones. Our results conclusively echo the most | ||
| critical challenges of toxic pollutants causing numerous health issues among the | ||
| population. Given an outcry among households adjacent to mines about land degradation | ||
| and food spoilage, and health problems over years, joint efforts are needed from | ||
| public and private sectors for stringent mining exploitation monitoring for sustainable | ||
| governance to protect the environment and ensure food and nutrition safety, and | ||
| population well-being in Zambia and the DR Congo. | ||
| raw_completion_output: |- | ||
| location: Kolwezi;Katanga Province;Luanshya;Copperbelt Province | ||
| environmental_material: water;food crops;ambient air;drinking water;cereals;roots and tubers;vegetables;fruits;food samples;urine samples | ||
| environments: Copperbelt;Lufilian geological structure arc | ||
| causal_relationships: effect of extraction on ecosystem damage;effect of pollution on population health;effect of trace metals on contamination of drinking water and foods;effect of pollutants on health issues | ||
| variables: Mn;Ni;Pb;Zn;Co;As;U;Cd;Cu;toxic pollutants;health issues;land degradation;food spoilage;children's samples;adult samples | ||
| measurements: Mn-5454.6 μg/L;Zn-2552.2 μg/L;Cd-138.7 μg/L;Pb-39.7 μg/L;U-2361.1 μg/L;Mn-108.9 μg/L;Zn-543.3 μg/L;Cd-0.3 μg/L;Pb-0.2 μg/L;U-1.5 μg/L;U-0.5 μg/L | ||
| prompt: |+ | ||
| Split the following piece of text into fields in the following format: | ||
| value: <the value of the measurement> | ||
| unit: <the unit of the measurement> | ||
| Text: | ||
| U-0.5 μg/L | ||
| === | ||
| extracted_object: | ||
| location: | ||
| - AUTO:Kolwezi | ||
| - AUTO:Katanga%20Province | ||
| - AUTO:Luanshya | ||
| - GAZ:00009425 | ||
| environmental_material: | ||
| - ENVO:00002006 | ||
| - ENVTHES:20523 | ||
| - ENVTHES:23 | ||
| - ENVO:00003064 | ||
| - AUTO:cereals | ||
| - AUTO:roots%20and%20tubers | ||
| - AUTO:vegetables | ||
| - ENVTHES:20576 | ||
| - ENVTHES:20523 | ||
| - ENVTHES:10152 | ||
| environments: | ||
| - AUTO:Copperbelt | ||
| - ENVTHES:10358 | ||
| causal_relationships: | ||
| - cause: AUTO:extraction | ||
| effect: ENVO:01001110 | ||
| - cause: ENVO:02500036 | ||
| effect: ENVTHES:20715 | ||
| - cause: ENVO:01001069 | ||
| effect: ENVO:00003064 | ||
| - cause: ENVTHES:20893 | ||
| effect: AUTO:health%20issues | ||
| variables: | ||
| - AUTO:Mn | ||
| - AUTO:Ni | ||
| - AUTO:Pb | ||
| - AUTO:Zn | ||
| - AUTO:Co | ||
| - AUTO:As | ||
| - AUTO:U | ||
| - AUTO:Cd | ||
| - AUTO:Cu | ||
| - ENVTHES:20893 | ||
| - AUTO:health%20issues | ||
| - ENVO:02500005 | ||
| - ENVTHES:20523 | ||
| - ENVTHES:10152 | ||
| - ENVTHES:10152 | ||
| measurements: | ||
| - value: '5454.6' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '2552.2' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '39.7' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '2361.1' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '108.9' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '0.3' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '0.2' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '1.5' | ||
| unit: AUTO:%CE%BCg/L | ||
| - value: '0.5' | ||
| unit: AUTO:%CE%BCg/L | ||
| named_entities: | ||
| - id: AUTO:Kolwezi | ||
| label: Kolwezi | ||
| - id: AUTO:Katanga%20Province | ||
| label: Katanga Province | ||
| - id: AUTO:Luanshya | ||
| label: Luanshya | ||
| - id: GAZ:00009425 | ||
| label: Copperbelt Province | ||
| - id: ENVO:00002006 | ||
| label: water | ||
| - id: ENVTHES:20523 | ||
| label: food crops | ||
| - id: ENVTHES:23 | ||
| label: ambient air | ||
| - id: ENVO:00003064 | ||
| label: drinking water | ||
| - id: AUTO:cereals | ||
| label: cereals | ||
| - id: AUTO:roots%20and%20tubers | ||
| label: roots and tubers | ||
| - id: AUTO:vegetables | ||
| label: vegetables | ||
| - id: ENVTHES:20576 | ||
| label: fruits | ||
| - id: ENVTHES:10152 | ||
| label: urine samples | ||
| - id: AUTO:Copperbelt | ||
| label: Copperbelt | ||
| - id: ENVTHES:10358 | ||
| label: Lufilian geological structure arc | ||
| - id: AUTO:extraction | ||
| label: extraction | ||
| - id: ENVO:01001110 | ||
| label: ecosystem damage | ||
| - id: ENVO:02500036 | ||
| label: pollution | ||
| - id: ENVTHES:20715 | ||
| label: population health | ||
| - id: ENVO:01001069 | ||
| label: trace metals | ||
| - id: ENVTHES:20893 | ||
| label: pollutants | ||
| - id: AUTO:health%20issues | ||
| label: health issues | ||
| - id: AUTO:Mn | ||
| label: Mn | ||
| - id: AUTO:Ni | ||
| label: Ni | ||
| - id: AUTO:Pb | ||
| label: Pb | ||
| - id: AUTO:Zn | ||
| label: Zn | ||
| - id: AUTO:Co | ||
| label: Co | ||
| - id: AUTO:As | ||
| label: As | ||
| - id: AUTO:U | ||
| label: U | ||
| - id: AUTO:Cd | ||
| label: Cd | ||
| - id: AUTO:Cu | ||
| label: Cu | ||
| - id: ENVO:02500005 | ||
| label: land degradation | ||
| - id: AUTO:%CE%BCg/L | ||
| label: μg/L |
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