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Fix bcftools stubs to behave like program #15435

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Fix bcftools stubs to behave like program

Fix bcftools stubs to behave like program #15435

Run time

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Job Run time
pytest-changes
6s
pytest-changes
6s
pytest-changes
6s
pre-commit
38s
pre-commit
38s
pre-commit
38s
editorconfig
12s
editorconfig
12s
editorconfig
12s
nf-test-changes
42s
nf-test-changes
42s
nf-test-changes
42s
prettier
29s
prettier
29s
prettier
29s
pytest (bcftools/convert, conda)
3m 49s
pytest (bcftools/convert, conda)
3m 49s
pytest (bcftools/convert, conda)
3m 28s
pytest (bcftools/convert, docker)
3m 36s
pytest (bcftools/convert, docker)
3m 36s
pytest (bcftools/convert, docker)
3m 35s
pytest (bcftools/convert, singularity)
2m 55s
pytest (bcftools/convert, singularity)
2m 55s
pytest (bcftools/convert, singularity)
3m 23s
nf-core-lint-modules (vcf_impute_glimpse)
45s
nf-core-lint-modules (vcf_impute_glimpse)
45s
nf-core-lint-modules (vcf_impute_glimpse)
45s
nf-core-lint-modules (bcftools/call)
1m 27s
nf-core-lint-modules (bcftools/call)
1m 27s
nf-core-lint-modules (bcftools/call)
1m 27s
nf-core-lint-modules (bcftools/concat)
2m 22s
nf-core-lint-modules (bcftools/concat)
2m 22s
nf-core-lint-modules (bcftools/concat)
2m 22s
nf-core-lint-modules (bcftools/merge)
1m 24s
nf-core-lint-modules (bcftools/merge)
1m 24s
nf-core-lint-modules (bcftools/merge)
1m 24s
nf-core-lint-modules (glimpse2/ligate)
1m 7s
nf-core-lint-modules (glimpse2/ligate)
1m 7s
nf-core-lint-modules (glimpse2/ligate)
1m 7s
nf-core-lint-modules (bcftools/filter)
1m 20s
nf-core-lint-modules (bcftools/filter)
1m 20s
nf-core-lint-modules (bcftools/filter)
1m 20s
nf-core-lint-modules (bcftools/reheader)
1m 24s
nf-core-lint-modules (bcftools/reheader)
1m 24s
nf-core-lint-modules (bcftools/reheader)
1m 24s
nf-core-lint-modules (bcftools/csq)
1m 57s
nf-core-lint-modules (bcftools/csq)
1m 57s
nf-core-lint-modules (bcftools/csq)
1m 57s
nf-core-lint-modules (bcftools/plugintag2tag)
1m 10s
nf-core-lint-modules (bcftools/plugintag2tag)
1m 10s
nf-core-lint-modules (bcftools/plugintag2tag)
1m 10s
nf-core-lint-modules (bcftools/annotate)
1m 42s
nf-core-lint-modules (bcftools/annotate)
1m 42s
nf-core-lint-modules (bcftools/annotate)
1m 42s
nf-core-lint-modules (bcftools/pluginscatter)
1m 19s
nf-core-lint-modules (bcftools/pluginscatter)
1m 19s
nf-core-lint-modules (bcftools/pluginscatter)
1m 19s
nf-core-lint-modules (glimpse/ligate)
1m 39s
nf-core-lint-modules (glimpse/ligate)
1m 39s
nf-core-lint-modules (glimpse/ligate)
1m 39s
nf-core-lint-modules (bcftools/pluginimputeinfo)
1m 21s
nf-core-lint-modules (bcftools/pluginimputeinfo)
1m 21s
nf-core-lint-modules (bcftools/pluginimputeinfo)
1m 21s
nf-core-lint-modules (bcftools/pluginsplit)
1m 6s
nf-core-lint-modules (bcftools/pluginsplit)
1m 6s
nf-core-lint-modules (bcftools/pluginsplit)
1m 6s
nf-core-lint-modules (bcftools/sort)
1m 25s
nf-core-lint-modules (bcftools/sort)
1m 25s
nf-core-lint-modules (bcftools/sort)
1m 25s
nf-core-lint-modules (bcftools/index)
1m 51s
nf-core-lint-modules (bcftools/index)
1m 51s
nf-core-lint-modules (bcftools/index)
1m 51s
nf-core-lint-modules (bcftools/norm)
1m 27s
nf-core-lint-modules (bcftools/norm)
1m 27s
nf-core-lint-modules (bcftools/norm)
1m 27s
nf-core-lint-modules (glimpse/concordance)
2m 13s
nf-core-lint-modules (glimpse/concordance)
2m 13s
nf-core-lint-modules (glimpse/concordance)
2m 13s
nf-test (modules/nf-core/bcftools/call, conda)
6m 36s
nf-test (modules/nf-core/bcftools/call, conda)
6m 36s
nf-test (modules/nf-core/bcftools/call, conda)
6m 36s
nf-core-lint-modules (bcftools/view)
1m 23s
nf-core-lint-modules (bcftools/view)
1m 23s
nf-core-lint-modules (bcftools/view)
1m 23s
nf-test (modules/nf-core/bcftools/call, docker_self_hosted)
3m 8s
nf-test (modules/nf-core/bcftools/call, docker_self_hosted)
3m 8s
nf-test (modules/nf-core/bcftools/call, docker_self_hosted)
3m 8s
nf-test (modules/nf-core/bcftools/call, singularity)
1m 43s
nf-test (modules/nf-core/bcftools/call, singularity)
3m 37s
nf-test (modules/nf-core/bcftools/call, singularity)
3m 37s
nf-test (modules/nf-core/bcftools/concat, conda)
6m 16s
nf-test (modules/nf-core/bcftools/concat, conda)
6m 16s
nf-test (modules/nf-core/bcftools/concat, conda)
6m 16s
nf-test (modules/nf-core/bcftools/concat, docker_self_hosted)
3m 23s
nf-test (modules/nf-core/bcftools/concat, docker_self_hosted)
3m 23s
nf-test (modules/nf-core/bcftools/concat, docker_self_hosted)
3m 23s
nf-test (modules/nf-core/bcftools/concat, singularity)
3m 43s
nf-test (modules/nf-core/bcftools/concat, singularity)
3m 43s
nf-test (modules/nf-core/bcftools/concat, singularity)
3m 43s
nf-test (modules/nf-core/bcftools/merge, conda)
12m 37s
nf-test (modules/nf-core/bcftools/merge, conda)
12m 37s
nf-test (modules/nf-core/bcftools/merge, conda)
12m 37s
nf-test (modules/nf-core/bcftools/merge, docker_self_hosted)
7m 7s
nf-test (modules/nf-core/bcftools/merge, docker_self_hosted)
7m 7s
nf-test (modules/nf-core/bcftools/merge, docker_self_hosted)
7m 7s
nf-test (modules/nf-core/bcftools/merge, singularity)
7m 15s
nf-test (modules/nf-core/bcftools/merge, singularity)
7m 15s
nf-test (modules/nf-core/bcftools/merge, singularity)
7m 15s
nf-test (modules/nf-core/glimpse2/ligate, conda)
49s
nf-test (modules/nf-core/glimpse2/ligate, conda)
49s
nf-test (modules/nf-core/glimpse2/ligate, conda)
2m 40s
nf-test (modules/nf-core/glimpse2/ligate, docker_self_hosted)
2m 14s
nf-test (modules/nf-core/glimpse2/ligate, docker_self_hosted)
2m 14s
nf-test (modules/nf-core/glimpse2/ligate, docker_self_hosted)
2m 14s
nf-test (modules/nf-core/glimpse2/ligate, singularity)
2m 0s
nf-test (modules/nf-core/glimpse2/ligate, singularity)
2m 0s
nf-test (modules/nf-core/glimpse2/ligate, singularity)
2m 0s
nf-test (modules/nf-core/bcftools/filter, conda)
6m 18s
nf-test (modules/nf-core/bcftools/filter, conda)
6m 18s
nf-test (modules/nf-core/bcftools/filter, conda)
6m 18s
nf-test (modules/nf-core/bcftools/filter, docker_self_hosted)
3m 30s
nf-test (modules/nf-core/bcftools/filter, docker_self_hosted)
3m 30s
nf-test (modules/nf-core/bcftools/filter, docker_self_hosted)
3m 30s
nf-test (modules/nf-core/bcftools/filter, singularity)
3m 30s
nf-test (modules/nf-core/bcftools/filter, singularity)
3m 30s
nf-test (modules/nf-core/bcftools/filter, singularity)
3m 30s
nf-test (modules/nf-core/bcftools/reheader, conda)
49s
nf-test (modules/nf-core/bcftools/reheader, conda)
49s
nf-test (modules/nf-core/bcftools/reheader, conda)
7m 59s
nf-test (modules/nf-core/bcftools/reheader, docker_self_hosted)
4m 17s
nf-test (modules/nf-core/bcftools/reheader, docker_self_hosted)
4m 17s
nf-test (modules/nf-core/bcftools/reheader, docker_self_hosted)
4m 17s
nf-test (modules/nf-core/bcftools/reheader, singularity)
4m 38s
nf-test (modules/nf-core/bcftools/reheader, singularity)
4m 38s
nf-test (modules/nf-core/bcftools/reheader, singularity)
4m 38s
nf-test (modules/nf-core/bcftools/csq, conda)
2m 47s
nf-test (modules/nf-core/bcftools/csq, conda)
2m 47s
nf-test (modules/nf-core/bcftools/csq, conda)
2m 47s
nf-test (modules/nf-core/bcftools/csq, docker_self_hosted)
1m 42s
nf-test (modules/nf-core/bcftools/csq, docker_self_hosted)
1m 42s
nf-test (modules/nf-core/bcftools/csq, docker_self_hosted)
1m 42s
nf-test (modules/nf-core/bcftools/csq, singularity)
1m 27s
nf-test (modules/nf-core/bcftools/csq, singularity)
1m 27s
nf-test (modules/nf-core/bcftools/csq, singularity)
1m 27s
nf-test (modules/nf-core/bcftools/plugintag2tag, conda)
5m 59s
nf-test (modules/nf-core/bcftools/plugintag2tag, conda)
5m 59s
nf-test (modules/nf-core/bcftools/plugintag2tag, conda)
5m 59s
nf-test (modules/nf-core/bcftools/plugintag2tag, docker_self_hosted)
3m 24s
nf-test (modules/nf-core/bcftools/plugintag2tag, docker_self_hosted)
3m 24s
nf-test (modules/nf-core/bcftools/plugintag2tag, docker_self_hosted)
3m 24s
nf-test (modules/nf-core/bcftools/plugintag2tag, singularity)
3m 46s
nf-test (modules/nf-core/bcftools/plugintag2tag, singularity)
3m 46s
nf-test (modules/nf-core/bcftools/plugintag2tag, singularity)
3m 46s
nf-test (modules/nf-core/bcftools/annotate, conda)
8m 28s
nf-test (modules/nf-core/bcftools/annotate, conda)
8m 28s
nf-test (modules/nf-core/bcftools/annotate, conda)
8m 28s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)
4m 14s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)
4m 14s
nf-test (modules/nf-core/bcftools/annotate, docker_self_hosted)
4m 14s
nf-test (modules/nf-core/bcftools/annotate, singularity)
4m 9s
nf-test (modules/nf-core/bcftools/annotate, singularity)
4m 9s
nf-test (modules/nf-core/bcftools/annotate, singularity)
4m 9s
nf-test (modules/nf-core/bcftools/pluginscatter, conda)
5m 18s
nf-test (modules/nf-core/bcftools/pluginscatter, conda)
5m 18s
nf-test (modules/nf-core/bcftools/pluginscatter, conda)
4m 17s
nf-test (modules/nf-core/bcftools/pluginscatter, docker_self_hosted)
3m 44s
nf-test (modules/nf-core/bcftools/pluginscatter, docker_self_hosted)
3m 44s
nf-test (modules/nf-core/bcftools/pluginscatter, docker_self_hosted)
3m 27s
nf-test (modules/nf-core/bcftools/pluginscatter, singularity)
3m 16s
nf-test (modules/nf-core/bcftools/pluginscatter, singularity)
3m 16s
nf-test (modules/nf-core/bcftools/pluginscatter, singularity)
3m 34s
nf-test (modules/nf-core/glimpse/ligate, conda)
3m 43s
nf-test (modules/nf-core/glimpse/ligate, conda)
3m 43s
nf-test (modules/nf-core/glimpse/ligate, conda)
3m 43s
nf-test (modules/nf-core/glimpse/ligate, docker_self_hosted)
1m 40s
nf-test (modules/nf-core/glimpse/ligate, docker_self_hosted)
1m 40s
nf-test (modules/nf-core/glimpse/ligate, docker_self_hosted)
1m 40s
nf-test (modules/nf-core/glimpse/ligate, singularity)
1m 16s
nf-test (modules/nf-core/glimpse/ligate, singularity)
1m 16s
nf-test (modules/nf-core/glimpse/ligate, singularity)
1m 16s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, conda)
8m 17s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, conda)
8m 17s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, conda)
8m 17s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, docker_self_hosted)
3m 2s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, docker_self_hosted)
3m 2s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, docker_self_hosted)
4m 19s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, singularity)
5m 27s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, singularity)
5m 27s
nf-test (modules/nf-core/bcftools/pluginimputeinfo, singularity)
5m 27s
nf-test (modules/nf-core/bcftools/pluginsplit, conda)
3m 2s
nf-test (modules/nf-core/bcftools/pluginsplit, conda)
3m 2s
nf-test (modules/nf-core/bcftools/pluginsplit, conda)
5m 32s
nf-test (modules/nf-core/bcftools/pluginsplit, docker_self_hosted)
2m 53s
nf-test (modules/nf-core/bcftools/pluginsplit, docker_self_hosted)
2m 53s
nf-test (modules/nf-core/bcftools/pluginsplit, docker_self_hosted)
2m 53s
nf-test (modules/nf-core/bcftools/pluginsplit, singularity)
3m 6s
nf-test (modules/nf-core/bcftools/pluginsplit, singularity)
3m 6s
nf-test (modules/nf-core/bcftools/pluginsplit, singularity)
3m 6s
nf-test (modules/nf-core/bcftools/sort, conda)
6m 7s
nf-test (modules/nf-core/bcftools/sort, conda)
6m 7s
nf-test (modules/nf-core/bcftools/sort, conda)
6m 7s
nf-test (modules/nf-core/bcftools/sort, docker_self_hosted)
3m 14s
nf-test (modules/nf-core/bcftools/sort, docker_self_hosted)
3m 14s
nf-test (modules/nf-core/bcftools/sort, docker_self_hosted)
3m 14s
nf-test (modules/nf-core/bcftools/sort, singularity)
3m 28s
nf-test (modules/nf-core/bcftools/sort, singularity)
3m 28s
nf-test (modules/nf-core/bcftools/sort, singularity)
3m 28s
nf-test (modules/nf-core/bcftools/index, conda)
3m 49s
nf-test (modules/nf-core/bcftools/index, conda)
3m 49s
nf-test (modules/nf-core/bcftools/index, conda)
4m 29s
nf-test (modules/nf-core/bcftools/index, docker_self_hosted)
1m 47s
nf-test (modules/nf-core/bcftools/index, docker_self_hosted)
1m 47s
nf-test (modules/nf-core/bcftools/index, docker_self_hosted)
2m 25s
nf-test (modules/nf-core/bcftools/index, singularity)
2m 12s
nf-test (modules/nf-core/bcftools/index, singularity)
2m 12s
nf-test (modules/nf-core/bcftools/index, singularity)
2m 28s
nf-test (modules/nf-core/bcftools/norm, conda)
48s
nf-test (modules/nf-core/bcftools/norm, conda)
48s
nf-test (modules/nf-core/bcftools/norm, conda)
10m 44s
nf-test (modules/nf-core/bcftools/norm, docker_self_hosted)
6m 4s
nf-test (modules/nf-core/bcftools/norm, docker_self_hosted)
6m 4s
nf-test (modules/nf-core/bcftools/norm, docker_self_hosted)
6m 4s
nf-test (modules/nf-core/bcftools/norm, singularity)
5m 39s
nf-test (modules/nf-core/bcftools/norm, singularity)
5m 39s
nf-test (modules/nf-core/bcftools/norm, singularity)
5m 39s
nf-test (modules/nf-core/glimpse/concordance, conda)
3m 19s
nf-test (modules/nf-core/glimpse/concordance, conda)
3m 19s
nf-test (modules/nf-core/glimpse/concordance, conda)
3m 19s
nf-test (modules/nf-core/glimpse/concordance, docker_self_hosted)
1m 9s
nf-test (modules/nf-core/glimpse/concordance, docker_self_hosted)
1m 9s
nf-test (modules/nf-core/glimpse/concordance, docker_self_hosted)
1m 59s
nf-test (modules/nf-core/glimpse/concordance, singularity)
2m 2s
nf-test (modules/nf-core/glimpse/concordance, singularity)
2m 2s
nf-test (modules/nf-core/glimpse/concordance, singularity)
2m 2s
nf-test (modules/nf-core/bcftools/view, conda)
6m 22s
nf-test (modules/nf-core/bcftools/view, conda)
6m 22s
nf-test (modules/nf-core/bcftools/view, conda)
6m 22s
nf-test (modules/nf-core/bcftools/view, docker_self_hosted)
3m 44s
nf-test (modules/nf-core/bcftools/view, docker_self_hosted)
3m 44s
nf-test (modules/nf-core/bcftools/view, docker_self_hosted)
3m 44s
nf-test (modules/nf-core/bcftools/view, singularity)
3m 35s
nf-test (modules/nf-core/bcftools/view, singularity)
3m 35s
nf-test (modules/nf-core/bcftools/view, singularity)
3m 35s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, conda)
2m 18s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, conda)
2m 18s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, conda)
2m 54s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, docker_self_hosted)
49s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, docker_self_hosted)
49s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, docker_self_hosted)
51s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, singularity)
1m 5s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, singularity)
1m 5s
nf-test (subworkflows/nf-core/vcf_impute_glimpse, singularity)
1m 36s
confirm-pass
1s
confirm-pass
1s
confirm-pass
1s
13h 25m 53s