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particle_diagnostics and build system upgrades #203

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wants to merge 93 commits into from
Closed

particle_diagnostics and build system upgrades #203

wants to merge 93 commits into from
+1,663 −449

Commits on Aug 23, 2024

  1. changes to build dependencies after install test

    Younkin T R authored and Harry Hughes committed Aug 23, 2024
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  2. updated circle example for tracking particle attributes

    Younkin T R authored and Harry Hughes committed Aug 23, 2024
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  3. added reading of particle time histogram variables and generation of … 

    …grid
    Younkin T R authored and Harry Hughes committed Aug 23, 2024
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  4. example producing same results as postprocessing

    Younkin T R authored and Harry Hughes committed Aug 23, 2024
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  5. added checks in geometry file to ensure input file for multiple surfa… 

    …ce time collection is working
    Younkin T R authored and Harry Hughes committed Aug 23, 2024
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  6. add particle_diagnostics to build system

    Harry Hughes committed Aug 23, 2024
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  7. Update gitr.cpp with ANGLE particle diagnostics

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  8. Update gitrInput.cfg of circle example to include part diag angle inputs 

    added bin_edge_0_angle and bin_edge_1_angle to all be example angles that might or might not be useful; n_bins_angle was set to 100 arbitrarily
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  9. Update particle_diagnostics.h with angle inputs

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  10. Update gitr.cpp to set ncDims and ncVars for ANGLE particle diagnostics

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  11. Update particle_diagnostics.cpp to initialize angle diagnostics 

    actual work to append to the angle histogram still needs to be done, but will be less time-consuming with Tim tomorrow
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  12. Update particle_diagnostics.cpp to include ANGLE histograms

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  13. Update Particles.h to include transitAngle field

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  14. Update particle_diagnostics.cpp to fix typos

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  15. Update particle_diagnostics.h to add in *_particle_angle_histogram

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  16. fix typos in gitr.cpp

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  17. Update particle_diagnostics.cpp to fix typo

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  18. Update gitr.cpp to fix problem with dims_part_hist 

    was giving both n_bins_time and n_bins_angle to both time and angle histograms, instead of giving them independent sets of dimensions
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  19. Update gitr.cpp to declare new dims varnames

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  20. Update gitr.cpp to add perpDist to history.nc

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  21. Update gitr.cpp to replace perpDist with perpDistanceToSurface

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  22. Update gitr.cpp to declare perpDistanceToSurface varnames

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  23. Update history.h to include perpDistanceToSurface

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  24. Update history.h to fix typos

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  25. Update history.h to add perpDistanceToSurface declaration

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  26. Update boris.cpp to update perpDistanceToSurface field of particle ob… 

    …ject
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  27. Update boris.cpp hoping to fix typos

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  28. Update boris.cpp to replace storing perp_dist with minDist

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  29. populate perpDistanceToSurface field of history.nc (hopefully)

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  30. Update particle_diagnostics.cpp to bin particles falling outside the … 

    …bin ranges
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  31. Update gitr.cpp to include pi constant from constants.h

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  32. Update particle_diagnostics.cpp to add log(angle) capability

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  33. Update particle_diagnostics.h to add log(angle) capability

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  34. Update gitr.cpp to add log(angle) capability

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  35. Update particle_diagnostics.cpp to attempt to add behavior for times_… 

    …logarithmic==0
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  36. Update particle_diagnostics.h to add ; typo

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  37. Update particle_diagnostics.cpp to debug if/else syntax

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  38. Update particle_diagnostics.cpp debug attempt 3

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  39. Update particle_diagnostics.cpp printf debugging 1

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  40. Update particle_diagnostics.cpp printf debugging 2

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  41. Update particle_diagnostics.cpp printf debug 3

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  42. Update particle_diagnostics.cpp printf debug 4

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  43. Update gitr.cpp to add nSurfaces to particle_diagnostics

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  44. Update particle_diagnostics.cpp printf debug 4

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  45. Update particle_diagnostics.cpp add comma

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  46. Update particle_diagnostics.h to add nSurfaces declaration

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  47. Update particle_diagnostics.h typo

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  48. Update particle_diagnostics.h typo

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  49. Update particle_diagnostics.cpp typo

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  50. Update particle_diagnostics.cpp remove printf debugging statements

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  51. Update particle_diagnostics.cpp to try to debug nP issue

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  52. Update particle_diagnostics.cpp to debug nP issue

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  53. Update particle_diagnostics.cpp to set weight to 0 at the end of the … 

    …file inside the hitWall ifstatement
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  54. turn off print statement debugging because the error was that you got… 

    …ta cast all booleans as 'true' or 'false'
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  55. begin debugging angle=0 when charge=1

    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  56. deactivated file_io_tests, debug mode, cuda=1

    Harry Hughes committed Aug 23, 2024
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  57. hopefully resolving merge conflict in noninteractive podman .sh bashfile

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  58. maintenance

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  59. Update particle_diagnostics.cpp to comment out debug print statement

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  60. Update compile_time_options.cmake to build with Release mode by default

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  61. new container files...

    Harry Hughes committed Aug 23, 2024
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  62. add correct bash script for gpu interactive build using podman and re… 

    …move vague podman bash script
    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  63. add volume lines to interactive podman build bash script

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  64. add untested noninteractive podman bash script

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  65. fixed debug/cuda mode

    Harry Hughes committed Aug 23, 2024
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  66. add build.sh to .gitignore

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  67. added cuda architectures, cpu/gpu working bare metal and containers

    Harry Hughes committed Aug 23, 2024
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  68. added printouts for errors

    Harry Hughes committed Aug 23, 2024
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  69. tried out a fix

    Harry Hughes committed Aug 23, 2024
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  70. static cast lookup table values

    Harry Hughes committed Aug 23, 2024
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  71. explicitly set surface_model enumeration

    Harry Hughes committed Aug 23, 2024
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  72. print keys before and after

    Harry Hughes committed Aug 23, 2024
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  73. more printout statements

    Harry Hughes committed Aug 23, 2024
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  74. stop overwriting my build.sh files

    @hayes2419
    hayes2419 authored and Harry Hughes committed Aug 23, 2024
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  75. added experimental flag to filesystem

    Harry Hughes committed Aug 23, 2024
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  76. removed std::filesystem due to inconsistent support

    Harry Hughes committed Aug 23, 2024
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  77. removed bloated config_interface from gitr.cpp

    Harry Hughes committed Aug 23, 2024
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  78. changed name of running container image

    Harry Hughes committed Aug 23, 2024
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Commits on Aug 30, 2024

  1. added pictures back to repo

    Harry Hughes committed Aug 30, 2024
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  2. Update README.md 

    comprehensive instructions
    @stonecoldhughes
    stonecoldhughes authored Aug 30, 2024
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Commits on Sep 25, 2024

  1. Update README.md

    @stonecoldhughes
    stonecoldhughes authored Sep 25, 2024
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  2. Update README.md

    @stonecoldhughes
    stonecoldhughes authored Sep 25, 2024
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Commits on Sep 26, 2024

  1. Update README.md

    @stonecoldhughes
    stonecoldhughes authored Sep 26, 2024
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  2. Update README.md

    @stonecoldhughes
    stonecoldhughes authored Sep 26, 2024
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Commits on Sep 27, 2024

  1. Update README.md

    @stonecoldhughes
    stonecoldhughes authored Sep 27, 2024
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  2. Update README.md

    @hayes2419
    hayes2419 authored Sep 27, 2024
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  3. Update README.md

    @hayes2419
    hayes2419 authored Sep 27, 2024
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Commits on Nov 1, 2024

  1. fixed some errors

    Harry Hughes committed Nov 1, 2024
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  2. Update README.md 

    User hint to make sure to make an output directory
    @stonecoldhughes
    stonecoldhughes authored Nov 1, 2024
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Commits on Nov 8, 2024

  1. output error if input directory not found; create output dir using 

    older C method
    Harry Hughes committed Nov 8, 2024
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  2. removing flags

    Harry Hughes committed Nov 8, 2024
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Commits on Nov 12, 2024

  1. removed breaking header

    Harry Hughes committed Nov 12, 2024
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  2. reset default compile time options

    @hayes2419
    hayes2419 committed Nov 12, 2024
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