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make MergeVcfs (more) deterministic dsp-appsec-trivy #639: Pull request #2000 opened by kachulis
February 27, 2025 14:49 1m 28s ck_mergevcfs_deterministic
ck_mergevcfs_deterministic
February 27, 2025 14:49 1m 28s
feat: Small CLP for collecting the histogram of unique UMIs counts within duplicate sets dsp-appsec-trivy #638: Pull request #1999 opened by yfarjoun
February 15, 2025 05:02 1m 28s yfarjoun:yf_new_clp_umi_tally
yfarjoun:yf_new_clp_umi_tally
February 15, 2025 05:02 1m 28s
fix: documentation errors in HsMetrics dsp-appsec-trivy #637: Pull request #1998 opened by yfarjoun
February 14, 2025 15:54 1m 27s yfarjoun:yf_correct_documentation
yfarjoun:yf_correct_documentation
February 14, 2025 15:54 1m 27s
Optionally extract all fingerprint snps dsp-appsec-trivy #636: Pull request #1989 synchronize by yfarjoun
February 11, 2025 23:13 1m 37s yfarjoun:yf_extract_all_snps_fingerprint
yfarjoun:yf_extract_all_snps_fingerprint
February 11, 2025 23:13 1m 37s
Change test values to doubles and add epsilon in CollectHsMetricsTest dsp-appsec-trivy #635: Pull request #1997 synchronize by lbergelson
February 11, 2025 18:47 1m 24s lb_fix_1987
lb_fix_1987
February 11, 2025 18:47 1m 24s
Change test values to doubles and add epsilon in CollectHsMetricsTest dsp-appsec-trivy #634: Pull request #1997 opened by lbergelson
February 11, 2025 18:40 1m 30s lb_fix_1987
lb_fix_1987
February 11, 2025 18:40 1m 30s
Make CollectSamErrorMetrics understand lowercased reference (and read) bases dsp-appsec-trivy #633: Pull request #1995 opened by yfarjoun
February 7, 2025 16:50 1m 26s yfarjoun:yf_fix_collect_sam_error_reference_case
yfarjoun:yf_fix_collect_sam_error_reference_case
February 7, 2025 16:50 1m 26s
Create a new tool, FilterReadsByFlowCellLocation for filtering out reads with specific flow cell coordinates dsp-appsec-trivy #632: Pull request #1992 synchronize by fleharty
February 5, 2025 20:54 1m 24s mf_FilterFlowCellEdgeReads
mf_FilterFlowCellEdgeReads
February 5, 2025 20:54 1m 24s
Updating GH actions upload artifact v3 -> v4 dsp-appsec-trivy #631: Pull request #1993 opened by lbergelson
February 5, 2025 18:15 1m 40s lb_update_ghaction
lb_update_ghaction
February 5, 2025 18:15 1m 40s
Create a new tool, FilterReadsByFlowCellLocation for filtering out reads with specific flow cell coordinates dsp-appsec-trivy #630: Pull request #1992 synchronize by fleharty
February 5, 2025 15:30 1m 38s mf_FilterFlowCellEdgeReads
mf_FilterFlowCellEdgeReads
February 5, 2025 15:30 1m 38s
Create a new tool, FilterReadsByFlowCellLocation for filtering out reads with specific flow cell coordinates dsp-appsec-trivy #629: Pull request #1992 opened by fleharty
February 5, 2025 15:11 1m 27s mf_FilterFlowCellEdgeReads
mf_FilterFlowCellEdgeReads
February 5, 2025 15:11 1m 27s
Optionally extract all fingerprint snps dsp-appsec-trivy #628: Pull request #1989 opened by yfarjoun
January 28, 2025 18:38 1m 28s yfarjoun:yf_extract_all_snps_fingerprint
yfarjoun:yf_extract_all_snps_fingerprint
January 28, 2025 18:38 1m 28s
Update outdated links to HaplotypeMap file format dsp-appsec-trivy #627: Pull request #1988 opened by lbergelson
January 13, 2025 21:28 1m 25s lb_update_haplotypemap_link
lb_update_haplotypemap_link
January 13, 2025 21:28 1m 25s
Fix failures to allocate arrays with a very large Java heap size dsp-appsec-trivy #626: Pull request #1986 opened by EthanNelson-Moore
December 17, 2024 23:17 1m 34s EthanNelson-Moore:large_mem_fixed
EthanNelson-Moore:large_mem_fixed
December 17, 2024 23:17 1m 34s
Update SamComparisonMetric.java and SamComparison.java to refactor ints to longs dsp-appsec-trivy #625: Pull request #1985 synchronize by gokalpcelik
December 16, 2024 13:35 1m 28s gc_SamComparisonMetric_refactor
gc_SamComparisonMetric_refactor
December 16, 2024 13:35 1m 28s
Update SamComparisonMetric.java and SamComparison.java to refactor ints to longs dsp-appsec-trivy #624: Pull request #1985 synchronize by gokalpcelik
December 16, 2024 13:33 1m 25s gc_SamComparisonMetric_refactor
gc_SamComparisonMetric_refactor
December 16, 2024 13:33 1m 25s
Update SamComparisonMetric.java and SamComparison.java to refactor ints to longs dsp-appsec-trivy #623: Pull request #1985 synchronize by gokalpcelik
December 16, 2024 13:19 1m 29s gc_SamComparisonMetric_refactor
gc_SamComparisonMetric_refactor
December 16, 2024 13:19 1m 29s
Update SamComparisonMetric.java and SamComparison.java to refactor ints to longs dsp-appsec-trivy #622: Pull request #1985 opened by gokalpcelik
December 16, 2024 13:13 56s gc_SamComparisonMetric_refactor
gc_SamComparisonMetric_refactor
December 16, 2024 13:13 56s
Testing https://github.com/samtools/htsjdk/pull/1709 dsp-appsec-trivy #621: Pull request #1984 opened by lbergelson
December 12, 2024 15:26 1m 29s lb_test_for_yossi
lb_test_for_yossi
December 12, 2024 15:26 1m 29s
better error message for crosscheck when dictionary checks fail. dsp-appsec-trivy #620: Pull request #1982 opened by yfarjoun
November 26, 2024 02:51 1m 24s yfarjoun:yf_move_log_earlier
yfarjoun:yf_move_log_earlier
November 26, 2024 02:51 1m 24s
Htsjdk Beta API first usage dsp-appsec-trivy #619: Pull request #1981 opened by lbergelson
November 22, 2024 19:11 1m 26s lb_beta_api_test
lb_beta_api_test
November 22, 2024 19:11 1m 26s
Add new argument to allow setting the google requester pays project dsp-appsec-trivy #618: Pull request #1938 synchronize by lbergelson
November 19, 2024 19:54 1m 43s lb_requester_pays
lb_requester_pays
November 19, 2024 19:54 1m 43s
FLOW_* parameters must be accompanied by FLOW_MODE dsp-appsec-trivy #617: Pull request #1980 synchronize by dror27
October 13, 2024 12:26 1m 24s Ultimagen:issue-1959-check-params
Ultimagen:issue-1959-check-params
October 13, 2024 12:26 1m 24s
FLOW_* parameters must be accompanied by FLOW_MODE dsp-appsec-trivy #616: Pull request #1980 synchronize by dror27
October 13, 2024 12:01 1m 25s Ultimagen:issue-1959-check-params
Ultimagen:issue-1959-check-params
October 13, 2024 12:01 1m 25s
FLOW_* parameters must be accompanied by FLOW_MODE dsp-appsec-trivy #615: Pull request #1980 opened by dror27
October 13, 2024 08:27 1m 27s Ultimagen:issue-1959-check-params
Ultimagen:issue-1959-check-params
October 13, 2024 08:27 1m 27s